Snakecdysis
0.0.1-RC
Package documentation
Snakecdysis package
snakecdysis.cli_wrapper Module
snakecdysis.snake_wrapper Module
Workflow documentation
Workflow functions
snakecdysis.install Module
snakecdysis.edit_files Module
snakecdysis.run Module
Usefull functions
Usefull functions
snakecdysis.usefull_function Module
Snakecdysis
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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R
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S
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U
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V
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W
A
args_cluster_config (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
args_tools_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
B
build_pdf() (in module snakecdysis.run)
C
check_and_download_singularity() (snakecdysis.snake_wrapper.SnakEcdysis method)
(snakecdysis.snake_wrapper.SnakeInstaller method)
check_privileges() (in module snakecdysis.usefull_function)
clean_home() (snakecdysis.snake_wrapper.SnakEcdysis method)
(snakecdysis.snake_wrapper.SnakeInstaller method)
convert_genome_size() (in module snakecdysis.usefull_function)
create_bash_completion() (snakecdysis.snake_wrapper.SnakEcdysis method)
(snakecdysis.snake_wrapper.SnakeInstaller method)
D
datatest_url_files (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
default_profile (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
description_tool (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
docs (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
download_url() (in module snakecdysis.usefull_function)
DownloadProgressBar (class in snakecdysis.usefull_function)
E
export_use_yaml (snakecdysis.snake_wrapper.SnakEcdysis attribute)
F
fail() (snakecdysis.snake_wrapper.SnakEcdysis method)
(snakecdysis.snake_wrapper.SnakeInstaller method)
G
get_config_value() (snakecdysis.snake_wrapper.SnakEcdysis method)
get_dir() (in module snakecdysis.usefull_function)
get_files_ext() (in module snakecdysis.usefull_function)
get_last_version() (snakecdysis.snake_wrapper.SnakEcdysis method)
(snakecdysis.snake_wrapper.SnakeInstaller method)
git_config_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
git_tools_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
git_url (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
I
install_mode (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
install_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
L
load_tool_configfile() (snakecdysis.snake_wrapper.SnakEcdysis method)
M
main_wrapper() (in module snakecdysis.cli_wrapper)
module
snakecdysis
snakecdysis.cli_wrapper
snakecdysis.edit_files
snakecdysis.install
snakecdysis.run
snakecdysis.snake_wrapper
snakecdysis.usefull_function
multiprocessing_download() (in module snakecdysis.usefull_function)
R
rewrite_if_bind() (in module snakecdysis.run)
S
set_config_value() (snakecdysis.snake_wrapper.SnakEcdysis method)
singularity_url_files (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
snakecdysis
module
SnakEcdysis (class in snakecdysis.snake_wrapper)
snakecdysis.cli_wrapper
module
snakecdysis.edit_files
module
snakecdysis.install
module
snakecdysis.run
module
snakecdysis.snake_wrapper
module
snakecdysis.usefull_function
module
snakefile (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
SnakeInstaller (class in snakecdysis.snake_wrapper)
snakemake_scripts (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
soft_name (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
string_to_dag (snakecdysis.snake_wrapper.SnakEcdysis attribute)
U
update_to() (snakecdysis.usefull_function.DownloadProgressBar method)
user_cluster_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
user_tools_path (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
V
var_2_bool() (in module snakecdysis.usefull_function)
version (snakecdysis.snake_wrapper.SnakEcdysis attribute)
(snakecdysis.snake_wrapper.SnakeInstaller attribute)
W
write_config() (snakecdysis.snake_wrapper.SnakEcdysis method)
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v: 0.0.1-RC
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