Workflow functions
Install Module
Snakecdysis offer the facility to easy install workflow configuration on Local or HPC.
install_local
Run installation for running in local computer.
The process downloading singularity images automatically.
PKGNAME install_local [OPTIONS]
Options
- --bash_completion, --no-bash_completion
Allow bash completion of PKGNAME commands on the bashrc file
- Default:
True
install_cluster
Run installation of tool for HPC cluster
PKGNAME install_cluster [OPTIONS]
Options
- -s, --scheduler <scheduler>
Type the HPC scheduler (for the moment, only slurm is available ! )
- Default:
slurm
- Options:
slurm
- -e, --env <env>
Mode for tools dependencies
- Default:
modules
- Options:
modules | singularity
- --bash_completion, --no-bash_completion
Allow bash completion of PKGNAME commands on the bashrc file
- Default:
True