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Installation

  • Install Snakecdysis python package
    • Requirement
    • Install the lastest release from PyPI - RECOMMENDED
    • Install the development version directly from the github repository
  • How to convert my snakemake workflow into a Python package combined to Snakecdysis ?
    • Generating the python package tree
    • Configuring your files
    • Transferring your snakemake workflow
    • update documentation comming soon

Package documentation

  • Snakecdysis package
    • snakecdysis.cli_wrapper Module
    • snakecdysis.snake_wrapper Module
  • Workflow functions
    • Install Module

Useful functions

  • Usefull functions
    • snakecdysis.useful_function Module
snakecdysis
  • Python Module Index

Python Module Index

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- snakecdysis
    snakecdysis.cli_wrapper
    snakecdysis.snake_wrapper
    snakecdysis.useful_function

© Copyright 2019-2025, S Ravel (CIRAD).